fragmentum
CHAPTER FOUR
INVESTIGATORS
VOL. I  ·  ISSUE 01
BERLIN  ·  2026
§4.0   PRINCIPAL INVESTIGATORS

Two founders.
Berlin, 2026.

The people who built album are building the company around it. One wrote the framework that research labs already publish with. The other ships production MCP servers as a daily craft. Together: the credibility scientists trust, and the engineering to turn it into a business.


S.
Co-founder
Sebastian Proft
Berlin · building the company side
  • Software engineering & product
  • MCP servers across home, games, ML
  • Co-creator of album-mcp
  • GTM, BD, fundraising lead

S. Proft.

Sebastian comes to Fragmentum from a background in software engineering, with the particular muscle of taking a research prototype and turning it into something a company can actually ship. He is the half of the team that thinks about pricing, contracts, hiring sequence, and the calendar between now and the next funding round.

LLMs and MCP servers are bread-and-butter work for Sebastian. He has authored MCP servers across three very different domains: claude-hass for smart-home control on Home Assistant, a 3D editor MCP for live editor automation, and an MCP layer on top of TFBS-NN, his deep-learning model for transcription-factor binding-site prediction. The protocol is not theoretical to him. It is the daily workflow.

Together with Jan Philipp, he co-built album-mcp, the MCP server layer that exposes album to AI agents. Sebastian wrote the dispatch logic, the 2FA gate, and the Docker packaging that lets album-mcp drop into any MCP-compatible client. He maintains the deployment story: how you run this on your laptop, how you run it on a server, how you run it inside a regulated enterprise.

At Fragmentum he carries the company side of the work: the founder who answers the email, signs the contract, and writes the investor pitch at 4am.

Selected Output

  • 2026album-mcp · co-creator · production MCP server (16 tools, 2FA)
  • 2026Fragmentum · co-founder · open-source → commercial
  • 20263D editor MCP · author · live editor automation
  • 2026claude-hass · author · MCP integration for Home Assistant
  • 2026TFBS-NN · MCP layer · PyTorch Lightning model for TF binding-site prediction
JP.
Co-founder
Jan Philipp Albrecht
Berlin · building the technology side
  • Creator of album
  • Co-creator of album-mcp
  • Computer science · bioimaging
  • arXiv 2110.00601, lead author

J. P. Albrecht.

Jan Philipp is the author of album. He started the framework as a piece of research infrastructure and published the paper that defines the solution abstraction. Over five years it has become a small institution: half-a-dozen public catalogs, four published papers, the data layer of a CZI Kaggle competition.

Together with Sebastian, he co-built album-mcp, adding the agentic AI layer on top of the framework he wrote. He is the founder who knows the conda solver tricks, the RDF schema details, the reasons certain decisions were made in 2021 that turned out to matter in 2026. He is the one researchers email at midnight when the lifecycle hooks misbehave.

He is also the named author on the foundational arXiv preprint, on Polarity-JaM in Nature Communications, and on ARI3D, and a contributor to the volume-EM protocol in Nature Protocols. The framework has, in other words, his fingerprints all over it.

Selected Output

  • 2025Polarity-JaM · co-first author · Nat. Commun.
  • 2025ARI3D · co-first author · arXiv preprint
  • 2024Vol-EM segmentation protocol · contributor · Nat. Protocols
  • 2021Album framework · lead author · arXiv 2110.00601
  • 2026album-mcp · co-creator · production MCP server

Advisor.

# Person Where they intersect with Fragmentum Domain
1Kyle HarringtonContributor to album-mcp. Co-author of the album framework paper. Builder of copick. Organiser of the CZII CryoET competition. Bridges album to cryo-ET.cryo-ET

Next: §5 · Manifesto.

Why this. Why now. Why us.

Continue → §5 Back to §3 ↩